Selected Publications
2024
- Singh et al. (2024). A comprehensive analysis to speculate the role of trithorax genes in photoperiod-mediated tuberization in potato and comparison with storage root crops.(under review)
- Kondhare and Banerjee (2024). Mobile Macromolecules and Crop Productivity- A future perspective.(under commissioning)
- Khan et al. (2024). Diversification of MSL proteins in early land plants with intrinsically disordered regions depict their functional enhancement in stress response. (under review)
- Mohanasundaram B., Palit, S., Bhide, A. J., Pala, M., Rajoria, K., Girigosavi, P., and Banerjee, A. K. (2024). PpSCARECROW1 (PpSCR1) regulates leaf blade and mid-vein development in Physcomitrium patens. Plant Molecular Biology DOI:10.1007/s11103-023-01398-6.
- Palit S., Bhide A., Mohanasundaram B., Pala M. and Banerjee A. K. (2024). Peptides from conserved tandem direct repeats of SHORT-LEAF regulate gametophore development in moss P. patens. Plant Physiology DOI:10.1093/plphys/kiad515.
2023
- Kondhare K. R., Patil N. S., Siddappa S., Hannapel D. J. and Banerjee A. K. (2023). Tandem expression of a mobile RNA and its RNA-binding protein(s) enhances tuber productivity in potato. Int. J. Mol. Sci. DOI:10.3390/ijms242115754.
- Malankar N. M., Kondhare K. R., Saha K., Mantri M. and Banerjee A. K. (2023). The Phased short-interfering RNA siRD29(-) regulates GIBBERELLIN 3-OXIDASE 3 during stolon-to-tuber transitions in potato. Plant Physiology DOI:10.1093/plphys/kiad493.
2022
- Kalsi H., Karkhanis A., Natarajan B., Bhide A. and Banerjee A. K. (2022). AUXIN RESPONSIVE FACTOR 16 (StARF16) regulates defense gene StNPR1 upon infection with necrotrophic pathogen in potato. Plant Molecular Biology DOI:10.1007/s11103-022-01261-0.
2021
- Kondhare K. R., Kumar A., Patil N. S., Malankar N., Saha K. and Banerjee A. K. (2021). Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism. Plant Physiology DOI:10.1093/plphys/kiab409.
- Mohanasundaram B., Bhide A. J., Palit S., Chaturvedi G., Lingwan M., Masakapalli S. K. and Banerjee A. K. (2021). A unique bryophyte-specific repeat containing protein SHORT-LEAF regulates gametophore development in moss Physcomitrium patens. Plant Physiology DOI:10.1093/plphys/kiab261.
- Kondhare K. R., Patil N. S. and Banerjee A. K. (2021). A historical overview of long-distance signalling in plants. Journal of Experimental Botany DOI:10.1093/jxb/erab048.
2020
- Kumar A., Kondhare K. R., Malankar N. and Banerjee A. K. (2020). StE(z)2, a Polycomb group methyltransferase and deposition of H3K27me3 and H3K4me3 regulate the expression of tuberization genes in potato.Journal of Experimental Botany DOI:10.1093/jxb/eraa468.
- Fruchard C., Badouin H., Latrasse D., Devani R., Muyle A., Rhoné B., Renner S., Banerjee A. K., Bendahmane A., and Gabriel A. B. Marais (2020). Evidence for Dosage Compensation in Coccinia grandis, a Plant with a Highly Heteromorphic XY System. Genes DOI:10.3390/genes11070787.
- Devani R.S., Kute A., John S. Adhikari S., Sinha S and Banerjee A. K. (2020). Development of a virus-induced gene silencing System for Dioecious Coccinia grandis. Molecular Biotechnology DOI:10.1007/s12033-020-00259-7.
- Natarajan B. and Banerjee A. K. (2020). MicroRNA160 regulates leaf curvature in potato ( Solanum tuberosum L. cv. Désirée). Plant Signaling & Behavior DOI:10.1080/15592324.2020.1744373.
- Kondhare K. R., Natarajan B., and Banerjee A. K. (2020). Molecular signals that govern tuber development in potato. Int. J. Dev. Biol DOI:10.1387/ijdb.190132ab.
2019
- Kumar A., Kondhare K. R., Vetal P. V., and Banerjee A. K. (2019). Polycomb group proteins StMSI1 and StBMI1-1 function upstream of miRNA156 to regulate aerial tuber formation in potato (S. tuberosum ssp. andigena) under short-day photoperiod. Plant Physiology DOI:10.1104/pp.19.00416.
- Kondhare K. R., Vetal P., Kalsi H., and Banerjee A. K. (2019). StBEL5 regulates CYCLING DOF FACTOR 1 (StCDF1) through TGAC core motifs in potato. Journal of Plant Physiology DOI:10.1016/j.jplph.2019.153014.
- Devani R. S., Chirmade T., Sinha S., Bendahmane A. and Banerjee A. K., Banerjee J. (2019). Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis. BMC Plant Biology. DOI:10.1186/s12870-019-1937-1.
- Kondhare K. R., Natarajan B., and Banerjee A. K. (2019). How are storage organs of root and tuber crops made? Mobile RNAs and proteins hold the promise! Current Science. 116, 10.
- Natarajan B., Kondhare K. R., Hannapel D. J. and Banerjee A. K. (2019). Mobile RNAs and proteins: Prospects in development of tuber and storage root crops. Plant Science. DOI:10.1016/j.plantsci.2019.03.019.
- Mohanasundaram B., Rajmane V. B., Jogdand S. V., Bhide A. J. and Banerjee A. K. (2019). Agrobacterium mediated Tnt1 mutagenesis of moss protonemal filaments and generation of stable mutants with impaired gametophyte. Molecular Genetics & Genomics. DOI:10.1007/s00438-019-01532-4.
2018
- Kondhare K. R., Malankar N., Devani R. S. and Banerjee A. K. (2018). Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions. BMC Plant Biology. DOI:10.1186/s12870-018-1501-4.
- Kondhare K. R., Kumar A., Hannapel D. J. and Banerjee A. K.. (2018). Conservation of polypyrimidine tract binding proteins and their putative target RNAs in several storage root crops. BMC Genomics. DOI:10.1186/s12864-018-4502-7
- Natarajan B., Kalsi H., Godbole P., Malankar N., Thiagarayaselvam A., Siddappa S., Thulasiram H. V., Chakraborti S. and Banerjee A. K. (2018). MiRNA160 is associated with local defense and systemic acquired resistance of potato during Phytophthora infestans infection. Journal of Experimental Botany. DOI:10.1093/jxb/ery025
2017
- Devani R. S., Sinha S., Banerjee J., Sinha R. K., Bendahmane A. and Banerjee A. K. (2017). De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification. BMC Plant Biology. DOI:10.1186/s12870-017-1187-z
- Natarajan B., Bhogale S. and Banerjee A. K. (2017). Essential role of microRNAs in Potato Tuber Development: A Review. Indian Journal of Plant Physiology. DOI:10.1007/s40502-017-0324-x
- Hannapel D. J., Sharma P., Lin T. and Banerjee A. K. (2017). An Update on the Tuber Activation Pathway: The multiple signals that control tuber formation. Plant Physiology. DOI:10.1104/pp.17.00272
- Hannapel D. J. and Banerjee A. K. (2017). Multiple mobile RNAs regulate tuber development in potato. Plants. 6,8. DOI:10.3390/plants6010008
- Ghate T.*, Sharma P.*, Kondhare K. R., Hannapel D.J., Banerjee A. K. (2017). The mobile RNAs, StBEL11 and StBEL29, suppress growth of tubers in potato. Plant Mol. Biol. 93(6), 563-578. DOI: 10.1007/s11103-016-0582-4
2016
- Santin F., Bhogale S., Fantino E., Grandellis C., Banerjee A. K., Ulloa R.(2016). Solanum tuberosum StCDPK1 is regulated by miR390 at the posttranscriptional level and phosphorylates the auxin efflux carrier StPIN4 in vitro, a potential downstream target in potato development. Physiol. Plant. DOI: 10.1111/ppl.12517
- Mahajan A. S., Kondhare K. R., Rajabhoj M. P., Kumar A., Ghate T., Ravindran N., Habib F., Siddappa S., Banerjee A. K. (2016). Regulation, over-expression and target gene identification of Potato Homeobox 15 (POTH15) - a class-I KNOX gene in potato. Journal of Experimental Botany. DOI:10.1093/jxb/erw2059
- Sinha S., Karmakar K., Devani R. S., Banerjee J., Sinha R. K., Banerjee A. K. (2016). Preparation of Mitotic and Meiotic Metaphase Chromosomes from Young Leaves and Flower Buds of Coccinia grandis. bio-protocol. 6(7), e1771. DOI: https://doi.org/10.21769/BioProtoc.1771
2014
- Ghadge A., Karmakar K., Devani R. S., Banerjee J., Mohanasundaram B., Sinha R. K., Sinha S., Banerjee A. K. (2014). Flower development, pollen fertility and sex expression analyses of three sexual phenotypes of Coccinia grandis. BMC Plant Biology. 14: 325. DOI: 10.1186/s12870-014-0325-0
- Bhogale S., Mahajan A., Natarajan B., Rajabhoj M., Thulasiram H. V., Banerjee A. K. (2014). miRNA156- A potential graft-transmissible microRNA that modulates plant architecture and tuberization in potato (Solanum tuberosum ssp andigena). Plant Physiology. 164, 1011-1027. DOI:http://dx.doi.org/10.1104/pp.113.230714
2012
- Mahajan A., Bhogale S., Kang I. H., Hannapel D. J., Banerjee A. K. (2012). The mRNA of a Knotted1-like transcription factor of potato is phloem mobile. Plant Mol. Biol. 79, 595–608. DOI:10.1007/s11103-012-9931-0
2009
- Banerjee A. K., Lin T & David J. Hannapel (2009). Untranslated regions of a mobile transcript mediate RNA metabolism. Plant Physiology. 151, 1831-1843.
Before 2008
- Chatterjee M., Banerjee A. K. & Hannapel D. J. (2007). A BELL-1 like gene of Potato is light activated and wound inducible. Plant Physiology. 145, 1435-1443.
- Banerjee A. K., Chatterjee M., Yu Y. Y., Suh S., Miller W. A. & Hannapel D. J. (2006). Dynamics of a mobile RNA of potato involved in a long distance signaling pathway. Plant Cell., 18: 3443-3457.
- Banerjee A. K., Salome Prat and Hannapel D. J. (2006). Efficient production of transgenic potato S. tuberosum L.ssp andigena) plants via Agrobacterium tumefaciens-mediated transformation. Plant Science. 170, 4, 732-738.
- Hannapel D. J. and Banerjee, A. K. (2005). Mobile RNA acts as a signal to regulate plant growth and development (U.S. Patent No. 7,579,150).
- Chen H., Banerjee A. K. and Hannapel D. J. (2004). The tandem complex of BEL and KNOX partners is required for transcriptional repression of ga20ox1. Plant Journal. 38, 276-284.
News
- Nilam's and Shirsa's manuscripts accepted in Plant Physiology.
- Shirsa succesfully defended her PhD thesis in September 2023.
- Shirsa got the post-doctoral position in Cold Spring Harbor Laboratory, New York.
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