Publications
A search of PubMed and Google Scholar should give you the latest list of our publications.
Preprints Peer-Reviewed PapersBook ChaptersPopular Writing/ComicsBooksReviews/Opinions
A search of PubMed and Google Scholar should give you the latest list of our publications.
Preprints Peer-Reviewed PapersBook ChaptersPopular Writing/ComicsBooksReviews/Opinions| S. no. | Title | Authors | Citation | First author | Publication | Year | Date | DOI |
|---|---|---|---|---|---|---|---|---|
| 1 | Physical Principles of Size and Frequency Scaling of Active Cytoskeletal Spirals | Soni A., Yadav S.A., Athale C.A. | arxiv cond-mat -> arXiv:2508.10114. | Soni Aman | ArXiV | submitted | submitted | 10.48550/arXiv.2508.10114 |
| 2 | Coin-tossing by Kinesin-1 Head and Tail Binding Collectively Drives Microtubule Patterns | Basu J, Singh K, Jannasch A and Athale CA | 2025.08.18.670853 | Basu Jashaswi | BioRXiV | submitted | submitted | 10.1101/2025.08.18.670853 |
| S. no. | Title | Authors | Citation | First author | Publication | Year | Date | DOI | ||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Mechanics of Escherichia coli cell width homeostasis and bulge dynamics from MreB and septum inhibition | Kale T, Dasgupta R, Inamdar MM, Athale CA. | Mol Biol Cell. 2025 Aug 28:mbcE24120543. doi: 10.1091/mbc.E24-12-0543. | Kale Tanvi | Mol Biol Cell | 2025 | 2025/08/28 | 10.1091/mbc.E24-12-0543 | ||
| 2 | Classification of first embryonic division stages of multiple Caenorhabditis species by deep learning | Khatri D, Negi P, Athale CA. | NPJ Syst Biol Appl. 2025 Aug 23;11(1):97. doi: 10.1038/s41540-025-00566-2. | Khatri Dhruv | NPJ Syst Biol Appl | 2025 | 2025/08/23 | 10.1038/s41540-025-00566-2 | ||
| 3 | Translational Enhancer Based Amplification of Toehold Sensors (TacToe) for Improved Sensitivity and Speed of Viral RNA Detection | Kale T, Pednekar R, Cazaux SM, Letelier VF, Vigar JRJ, Federici F, Pardee K, Athale CA. | ACS Synth Biol. 2025 Jun 20;14(6):1920-1930. doi: 10.1021/acssynbio.4c00861. | Kale Tanvi | ACS Synth Biol | 2025 | 2025/05/29 | 10.1021/acssynbio.4c00861 | ||
| 4 | Physical effects of crowdant size and concentration on collective microtubule polymerization | Basu J, Soni A, Athale CA. | Biophys J. 2025 Mar 4;124(5):789-806. doi: 10.1016/j.bpj.2025.01.020. | Basu Jashaswi | Biophys J | 2025 | 2025/01/31 | 10.1016/j.bpj.2025.01.020 | ||
| 5 | KnotResolver: tracking self-intersecting filaments in microscopy using directed graphs | Khatri D, Yadav SA, Athale CA. | Bioinformatics. 2024 Sep 2;40(9):btae538. doi: 10.1093/bioinformatics/btae538. | Khatri Dhruv | Bioinformatics | 2024 | 2024/09/03 | 10.1093/bioinformatics/btae538 | ||
| 6 | Collective effect of Vigna sp. (mung) tubulin GTP hydrolysis rate divergence on microtubule filament assembly | Basu J, Athale CA. | Cytoskeleton (Hoboken). 2025 Apr;82(4):242-259. doi: 10.1002/cm.21923. | Basu Jashaswi | Cytoskeleton (Hoboken) | 2025 | 2024/09/02 | 10.1002/cm.21923 | ||
| 7 | Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking | Kale T, Khatri D, Basu J, Yadav SA, Athale CA. | J Microsc. 2024 Nov;296(2):162-168. doi: 10.1111/jmi.13295. | Kale Tanvi | J Microsc | 2024 | 2024/04/04 | 10.1111/jmi.13295 | ||
| 8 | Wave-like oscillations of clamped microtubules driven by collective dynein transport | Yadav SA, Khatri D, Soni A, Khetan N, Athale CA. | Biophys J. 2024 Feb 20;123(4):509-524. doi: 10.1016/j.bpj.2024.01.016. | Yadav Shivani A. | Biophys J | 2024 | 2024/01/23 | 10.1016/j.bpj.2024.01.016 | ||
| 9 | Allometry of Escherichia coli surface area with volume: effect of size variability, filamentation and division dynamics | Kale T, Khatri D, Athale CA. | Phys Biol. 2023 Jun 20;20(4). doi: 10.1088/1478-3975/acdcda. | Kale Tanvi | Phys Biol | 2023 | 2023/06/08 | 10.1088/1478-3975/acdcda | ||
| 10 | Evolutionary divergence of anaphase spindle mechanics in nematode embryos constrained by antagonistic pulling and viscous forces | Khatri D, Brugière T, Athale CA, Delattre M. | Mol Biol Cell. 2022 May 15;33(6):ar61. doi: 10.1091/mbc.E21-10-0532. | Khatri Dhruv | Mol Biol Cell | 2022 | 2022/03/02 | 10.1091/mbc.E21-10-0532 | ||
| 11 | Polymerization kinetics of tubulin from mung seedlings modeled as a competition between nucleation and GTP-hydrolysis rates | Jain K, Basu J, Roy M, Yadav J, Patil S, Athale CA. | Cytoskeleton (Hoboken). 2021 Sep;78(9):436-447. doi: 10.1002/cm.21694. | Jain Kunalika | Cytoskeleton (Hoboken) | 2021 | 2022/03/02 | 10.1002/cm.21694 | ||
| 12 | Self-organized optimal packing of kinesin-5-driven microtubule asters scales with cell size | Khetan N, Pruliere G, Hebras C, Chenevert J, Athale CA. | J Cell Sci. 2021 May 15;134(10):jcs257543. doi: 10.1242/jcs.257543. | Khetan Neha | J Cell Sci | 2021 | 2021/06/03 | 10.1242/jcs.257543 | ||
| 13 | Collective dynein transport of the nucleus by pulling on astral microtubules during Saccharomyces cerevisiae mitosis | Jain K, Khetan N, Yadav SA, Palani S, Athale CA. | Yeast. 2021 Jun;38(6):352-366. doi: 10.1002/yea.3552. | Jain Kunalika | Yeast | 2021 | 2021/02/06 | 10.1002/yea.3552 | ||
| 14 | Quantifying Intracellular Particle Flows by DIC Object Tracking | Chaphalkar AR, Jawale YK, Khatri D, Athale CA. | Biophys J. 2021 Feb 2;120(3):393-401. doi: 10.1016/j.bpj.2020.12.013. | Chaphalkar Anushree R. | Biophys J | 2021 | 2020/12/28 | 10.1016/j.bpj.2020.12.013 | ||
| 15 | 15 |
Aster swarming by symmetry breaking of cortical dynein transport and coupling kinesins |
Khetan N, Athale CA. |
Soft Matter. 2020 Sep 30;16(37):8554-8564. doi: 10.1039/d0sm01086c. |
Khetan Neha |
Soft Matter |
2020 |
2020/08/26 |
10.1039/d0sm01086c |
|
| 16 |
Modeling the tunability of the dual-feedback genetic oscillator |
Joshi YJ, Jawale YK, Athale CA. |
Phys Rev E. 2020 Jan;101(1-1):012417. doi: 10.1103/PhysRevE.101.012417. |
Joshi Yash J |
Phys Rev E |
2020 |
2020/02/20 |
10.1103/PhysRevE.101.012417 |
||
| 17 |
Collective effects of yeast cytoplasmic dynein based microtubule transport |
Jain K , Khetan N , Athale CA . |
Soft Matter. 2019 Feb 13;15(7):1571-1581. doi: 10.1039/c8sm01434e. |
Jain Kunalika |
Soft Matter |
2019 |
2019/01/22 |
10.1039/c8sm01434e |
||
| 18 |
Open Source 3D-printed focussing mechanism for cellphone-based cellular microscopy |
Jawale YK, Rapol U, Athale CA. |
J Microsc. 2019 Feb;273(2):105-114. doi: 10.1111/jmi.12765. Epub 2018 Nov 12. |
Jawale Yash K |
J Microsc |
2019 |
2018/11/13 |
10.1111/jmi.12765 |
||
| 19 |
Role of spatial inhomogenity in GPCR dimerisation predicted by receptor association-diffusion models |
Deshpande SA, Pawar AB, Dighe A, Athale CA, Sengupta D. |
Phys Biol. 2017 May 23;14(3):036002. doi: 10.1088/1478-3975/aa6b68. |
Deshpande Sneha A |
Phys Biol |
2017 |
2017/05/24 |
10.1088/1478-3975/aa6b68 |
||
| 20 |
Threshold effect of growth rate on population variability of Escherichia coli cell lengths |
Gangan MS, Athale CA. |
R Soc Open Sci. 2017 Feb 22;4(2):160417. doi: 10.1098/rsos.160417. eCollection 2017 Feb. |
Gangan Manasi S |
R Soc Open Sci |
2017 |
2017/04/08 |
10.1098/rsos.160417 |
||
| 21 |
Chaphalkar AR, Jain K, Gangan MS, Athale CA. |
PLoS One. 2016 Dec 19;11(12):e0167620. doi: 10.1371/journal.pone.0167620. eCollection 2016. |
Chaphalkar Anushree R |
PLoS One |
2016 |
2016/12/20 |
10.1371/journal.pone.0167620 |
|||
| 22 |
Khetan N, Athale CA. |
PLoS Comput Biol. 2016 Oct 5;12(10):e1005102. doi: 10.1371/journal.pcbi.1005102. eCollection 2016 Oct. |
Khetan Neha |
PLoS Comput Biol |
2016 |
2016/10/06 |
10.1371/journal.pcbi.1005102 |
|||
| 23 |
What can simulations tell us about GPCRs: Integrating the scales |
Sengupta D, Joshi M, Athale CA, Chattopadhyay A. |
Methods Cell Biol. 2016;132:429-52. doi: 10.1016/bs.mcb.2015.11.007. Epub 2015 Dec 24. |
Sengupta Durba |
Methods Cell Biol |
2016 |
2016/03/02 |
10.1016/bs.mcb.2015.11.007 |
||
| 24 |
Thermodynamic and kinetic characterization of transmembrane helix association |
Pawar AB, Deshpande SA, Gopal SM, Wassenaar TA, Athale CA, Sengupta D. |
Phys Chem Chem Phys. 2015 Jan 14;17(2):1390-8. doi: 10.1039/c4cp03732d. Epub 2014 Nov 26. |
Pawar Aiswarya B |
Phys Chem Chem Phys |
2015 |
2014/11/27 |
10.1039/c4cp03732d |
||
| 25 |
Collective behavior of minus-ended motors in mitotic microtubule asters gliding toward DNA |
Athale CA, Dinarina A, Nedelec F, Karsenti E. |
Phys Biol. 2014 Feb;11(1):016008. doi: 10.1088/1478-3975/11/1/016008. Epub 2014 Jan 29. |
Athale Chaitanya A |
Phys Biol |
2014 |
2014/01/31 |
10.1088/1478-3975/11/1/016008 |
||
| 26 |
Spatial and temporal sensing limits of microtubule polarization in neuronal growth cones by intracellular gradients and forces |
Mahajan S, Athale CA. |
Biophys J. 2012 Dec 19;103(12):2432-45. doi: 10.1016/j.bpj.2012.10.021. Epub 2012 Dec 18. |
Mahajan Saurabh |
Biophys J |
2012 |
2012/12/25 |
10.1016/j.bpj.2012.10.021 |
||
| 27 |
Population length variability and nucleoid numbers in Escherichia coli |
Athale CA, Chaudhari H. |
Bioinformatics. 2011 Nov 1;27(21):2944-8. doi: 10.1093/bioinformatics/btr501. Epub 2011 Sep 19. |
Athale Chaitanya A |
Bioinformatics |
2011 |
2011/09/21 |
10.1093/bioinformatics/btr501 |
||
| 28 |
Regulation of microtubule dynamics by reaction cascades around chromosomes |
Athale CA, Dinarina A, Mora-Coral M, Pugieux C, Nedelec F, Karsenti E. |
Science. 2008 Nov 21;322(5905):1243-7. doi: 10.1126/science.1161820. Epub 2008 Oct 23. |
Athale Chaitanya A |
Science |
2008 |
2008/10/25 |
10.1126/science.1161820 |
||
| 29 |
Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer |
Zhang L, Athale CA, Deisboeck TS. |
J Theor Biol. 2007 Jan 7;244(1):96-107. doi: 10.1016/j.jtbi.2006.06.034. Epub 2006 Jul 27. |
Zhang Le |
J Theor Biol |
2007 |
2006/09/05 |
10.1016/j.jtbi.2006.06.034 |
||
| 30 |
The effects of EGF-receptor density on multiscale tumor growth patterns |
Athale CA, Deisboeck TS. |
J Theor Biol. 2006 Feb 21;238(4):771-9. doi: 10.1016/j.jtbi.2005.06.029. Epub 2005 Aug 26. |
Athale Chaitanya A |
J Theor Biol |
2006 |
2005/08/30 |
10.1016/j.jtbi.2005.06.029 |
||
| 31 |
Inferring a system model of subcellular topoisomerase II beta localization dynamics |
Athale CA, Christensen MO, Eils R, Boege F, Mielke C. |
OMICS. 2004 Summer;8(2):167-75. doi: 10.1089/1536231041388339. |
Athale Chaitanya A |
OMICS |
2004 |
2004/07/23 |
10.1089/1536231041388339 |
| S. no. | Authors | Year | Title | Journal | Volume, issue | DOI |
|---|---|---|---|---|---|---|
| 1 | Tanvi Kale, Dhruv Khatri, Jashaswi Basu, Shivani A Yadav, C. A. Athale | 2024 | Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking. | J. Microsc. | Volume296, Issue2 Special Issue: Imaging ONEWORLD November 2024 Pages 162-168 | doi:10.1111/jmi.13295 |
| Eils R. and Athale, C.A. | 2003 | Computational Imaging in Cell Biology. | J. Cell Biol. | 161(3):477-481 | https://doi.org/10.1083/jcb.200302097 |
| S. no. | Authors | Year | Chapter Title | Book title | Editor | Publisher | Link | DOI | 1 | N. Khetan and C. A. Athale | 2020 | Flocking, swirling and spinning stars in a cell. | Art of Theoretical Biology | Franziska Matthäus, Sebastian Matthäus, Sarah Harris, Thomas Hillen | Springer, Cham | https://link.springer.com/chapter/10.1007/978-3-030-33471-0_43 | https://doi.org/10.1007/978-3-030-33471-0_43 |
|---|---|---|---|---|---|---|---|---|
| 2 | Athale C.A. | 2011 | Modelling the Spatial Pattern Forming Modules in Mitotic Spindle Assembly. | Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology | Werner Dubitzky, Jennifer Southgate, Hendrik Fuß | Springer, New York, NY, USA | https://link.springer.com/book/10.1007/978-1-4419-7964-3 | https://doi.org/10.1007/978-1-4419-7964-3 |
| 3 | Athale C.A. and Deisboeck, T.S. | 2007 | Chapter 193: Simulating the impact of Angiogenesis on multiscale tumor growth dynamics using an agent-based Model. | Endothelial Biomedicine | Cambridge University Press, New York, NY, USA | |||
| 4 | Athale, C., Gebhard, M. and Eils, R. | 2002 | Examining Spatio-Temporal Dynamics in Cell Nuclei by Image Processing Methods. | Science, Technology and Education of Microscopy: An Overview, vol. I | A. Méndez-Vilas (Ed.) | FORMATEX Microscopy Book Series. |
| S. no. | Authors | Year | Book title | Publisher | Link | DOI |
|---|---|---|---|---|---|---|
| 1 | Athale C.A. | in prep. | Cellular biophysics: a framework for quantitative cell biology | Taylor and Francis |
| S. no. | Authors | Year | Title | Publisher/Journal | Link |
|---|---|---|---|---|---|
| 1 | Tanvi Kale and Chaitanya A. Athale. Illustrator: Madhumita Laddha | 2025 | Balloon Physics: Bacteria v/s Antibiotics | Self | Download and Print (its free!) [PDF], [PNG] |
| 2 | Staff reporter with inputs from C.A. Athale | 2025 | India Science Fest 2025 stall on balloon physics, bacteria and antibiotics | IISER Pune news | India Science Fest |
| 3 | Athale C.A. | 2016 | Open Source Synthetic Biology for (Not Just) Undergraduates | IndiaBioscience | IndiaBioscience Blog |
| 4 | Athale C.A. | 2015 | Originality in scientific writing: Avoiding the slippery slope of plagiarism | India Bioscience | IndiaBioscience Blog |